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Associate Professor Jonathan Marshall staff profile picture

Contact details +6469517585

Associate Professor Jonathan Marshall BInfSc(Hons), BSc, PhD

Associate Professor in Statistics

Doctoral Supervisor
School of Mathematical and Computational Sciences

I am a statistian whose main research interests are in on the modelling of disease via the two main areas of source attribution and spatio-temporal modelling usually in a Bayesian context. In source attribution, I develop statistical models for determining where human cases of disease originate from putative food or environmental sources by utilising genetic signatures of disease in addition to demographic covariates. In spatio-temporal modelling I'm interested in determining trends in space and time and determining where and when case rates are in excess of expected rates to identify potential outbreaks.

I enjoy writing statistical software packages for R and have a strong interest in statistical graphics, visualisation of uncertainty and other areas of communication of statistics and science.

I am a statistian whose main research interests are in on the modelling of disease via the two main areas of source attribution and spatio-temporal modelling usually in a Bayesian context. In source attribution, I develop statistical models for determining where human cases of disease originate from putative food or environmental sources by utilising genetic signatures of disease in addition to demographic covariates. In spatio-temporal modelling I'm interested in determining trends in space and time and determining where and when case rates are in excess of expected rates to identify potential outbreaks.

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Professional

Contact details

  • Ph: 84585
    Location: ScB3.17, Science Tower B
    Campus: Turitea

Qualifications

  • Bachelor of Information Science (Honours) - 羞羞视频 (1999)
  • Bachelor of Science - 羞羞视频 (1998)
  • PhD Mathematics - 羞羞视频 (2019)

Certifications and Registrations

  • Licence, Supervisor, 羞羞视频

Prizes and Awards

  • Poster prize, CHRO 2017 - 19th International Workshop on Campylobacter, Helicobacter and Related Organisms (2017)

Research Expertise

Research Interests

Statistics

Thematics

21st Century Citizenship, Health and Well-being

Area of Expertise

Field of research codes
Bioinformatics Software (080301):
Biological Sciences (060000):
Biostatistics (010402):
Computer Software (080300):
Epidemiology (111706):
Information And Computing Sciences (080000):
Mathematical Sciences (010000):
Medical And Health Sciences (110000):
Open Software (080306):
Probability Theory (010404):
Public Health and Health Services (111700):
Statistical Theory (010405): Statistics (010400)

Research Projects

Completed Projects

Project Title: Delineation of naturalised freshwater Escherichia species to establish relationship with waterborne pathogens (Our Land and Water National Science Challenge)

Date Range: 2022 - 2023

Funding Body: AgResearch Ltd

Project Team:

Research Outputs

Journal

Horpiencharoen, W., Muylaert, RL., Marshall, JC., John, RS., Lynam, AJ., Riggio, A., . . . Hayman, DTS. (2024). Mapping threatened Thai bovids provides opportunities for improved conservation outcomes in Asia. Royal Society Open Science. 11(9)
[Journal article]Authored by: de Lara Muylaert, R., Hayman, D., Marshall, J.
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Cookson, AL., Devane, M., Marshall, JC., Moinet, M., Gardner, A., Collis, RM., . . . Leonard, M. (2024). Population structure and pathogen interaction of Escherichia coli in freshwater: Implications of land-use for water quality and public health in Aotearoa New Zealand. Environmental Microbiology Reports. 16(4)
[Journal article]Authored by: Biggs, P., Hayman, D., Marshall, J., Pita, A.
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Horpiencharoen, W., Marshall, JC., Muylaert, RL., John, RS., & Hayman, DTS. (2024). Impact of infectious diseases on wild bovidae populations in Thailand: Insights from population modelling and disease dynamics. Journal of the Royal Society Interface. 21(216)
[Journal article]Authored by: de Lara Muylaert, R., Hayman, D., Marshall, J.
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Smith, HL., Biggs, PJ., French, NP., Smith, ANH., & Marshall, JC. (2024). Lost in the Forest: Encoding categorical variables and the absent levels problem. Data Mining and Knowledge Discovery. 38(4), 1889-1908
[Journal article]Authored by: Biggs, P., French, N., Marshall, J., Smith, A.
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Moinet, M., Collis, RM., Rogers, L., Devane, ML., Biggs, PJ., Stott, R., . . . Cookson, AL. (2024). Development of a multiplex droplet digital PCR assay for simultaneous detection and quantification of Escherichia coli, E. marmotae, and E. ruysiae in water samples. Journal of Microbiological Methods. 220
[Journal article]Authored by: Biggs, P., Marshall, J.
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Biggs, PJ., Moinet, M., Rogers, LE., Devane, M., Muirhead, R., Stott, R., . . . Cookson, AL. (2024). Draft genome sequences of Escherichia spp. isolates from New Zealand environmental sources. Microbiology Resource Announcements. 13(3)
[Journal article]Authored by: Biggs, P., Marshall, J.
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Moinet, M., Rogers, L., Biggs, P., Marshall, J., Muirhead, R., Devane, M., . . . Cookson, A. (2024). High-resolution genomic analysis to investigate the impact of the invasive brushtail possum (Trichosurus vulpecula) and other wildlife on microbial water quality assessments. PLoS ONE. 19(1 January)
[Journal article]Authored by: Biggs, P., Marshall, J.
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Brown, SE., Collett, MG., Matthews, ZM., Marshall, JC., & Dittmer, KE. (2023). Enzootic calcinosis in Toggenburg goats in New Zealand. New Zealand Veterinary Journal. 72(1), 45-52
[Journal article]Authored by: Dittmer, K., Marshall, J.
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Nisa, S., Vallee, E., Marshall, J., Collins-Emerson, J., Yeung, P., Prinsen, G., . . . Benschop, J. (2023). Leptospirosis in Aotearoa New Zealand: Protocol for a Nationwide Case-Control 羞羞视频. JMIR Research Protocols. 12
[Journal article]Authored by: Benschop, J., Collins-Emerson, J., Douwes, J., Fayaz, A., Littlejohn, S., Marshall, J., Nisa, S., Prinsen, J., Vallee, E., Yeung, P.
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Toombs-Ruane, LJ., Marshall, JC., Benschop, J., Drinkovi膰, D., Midwinter, AC., Biggs, PJ., . . . Burgess, SA. (2023). Extended-spectrum 尾-lactamase- and AmpC 尾-lactamase-producing Enterobacterales associated with urinary tract infections in the New Zealand community: a case-control study. International Journal of Infectious Diseases. 128, 325-334
[Journal article]Authored by: Benschop, J., Biggs, P., Burgess, S., Douwes, J., French, N., Marshall, J., Midwinter, A.
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Grout, L., Marshall, J., Hales, S., Baker, MG., & French, N. (2022). Dairy Cattle Density and Temporal Patterns of Human Campylobacteriosis and Cryptosporidiosis in New Zealand. EcoHealth. 19(2), 273-289
[Journal article]Authored by: French, N., Marshall, J.
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Cookson, AL., Marshall, JC., Biggs, PJ., Rogers, LE., Collis, RM., Devane, M., . . . Brightwell, G. (2022). Whole-Genome Sequencing and Virulome Analysis of Escherichia coli Isolated from New Zealand Environments of Contrasting Observed Land Use. Applied and Environmental Microbiology. 88(9)
[Journal article]Authored by: Biggs, P., Marshall, J.
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Dittmer, KE., Chernyavtseva, A., Marshall, JC., Cabrera, D., Wolber, FM., & Kruger, M. (2022). Expression of renal vitamin d and phosphatonin-related genes in a sheep model of osteoporosis. Animals. 12(1)
[Journal article]Authored by: Dittmer, K., Kruger, M., Marshall, J.
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Bloomfield, SJ., Midwinter, AC., Biggs, PJ., French, NP., Marshall, JC., Hayman, DTS., . . . Benschop, J. (2021). Genomic adaptations of Campylobacter jejuni to long-term human colonization. Gut Pathogens. 13(1)
[Journal article]Authored by: Benschop, J., Biggs, P., Fayaz, A., French, N., Hayman, D., Marshall, J., Midwinter, A.
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Sokolova, M., Marshall, JC., & Benschop, J. (2021). Risk factors for hospitalisation amongst leptospirosis patients in new zealand. Tropical Medicine and Infectious Disease. 6(4)
[Journal article]Authored by: Benschop, J., Marshall, J.
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Bloomfield, SJ., Benschop, J., Midwinter, AC., Biggs, PJ., Marshall, JC., Hayman, DTS., . . . French, NP. (2021). Genomic and phenotypic comparison of two Salmonella Typhimurium strains responsible for consecutive salmonellosis outbreaks in New Zealand. International Journal of Medical Microbiology. 311(7)
[Journal article]Authored by: Benschop, J., Biggs, P., Burgess, S., French, N., Hayman, D., Marshall, J., Midwinter, A.
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Hranac, CR., Haase, CG., Fuller, NW., McClure, ML., Marshall, JC., Lausen, CL., . . . Hayman, DTS. (2021). What is winter? Modeling spatial variation in bat host traits and hibernation and their implications for overwintering energetics. Ecology and Evolution. 11(17), 11604-11614
[Journal article]Authored by: Hayman, D., Marshall, J.
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Roberts, MG., Burgess, S., Toombs-Ruane, LJ., Benschop, J., Marshall, JC., & French, NP. (2021). Combining mutation and horizontal gene transfer in a within-host model of antibiotic resistance. Mathematical Biosciences. 339
[Journal article]Authored by: Benschop, J., Burgess, S., French, N., Marshall, J.
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Springer Browne, A., Midwinter, AC., Withers, AH., Cookson, AL., Biggs, PJ., Marshall, JC., . . . French, NP. (2021). Transmission Dynamics of Shiga Toxin-Producing Escherichia coli in New Zealand Cattle from Farm to Slaughter. Applied and Environmental Microbiology. 87(11), 1-16
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A., Nisa, S.
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Lake, RJ., Campbell, DM., Hathaway, SC., Ashmore, E., Cressey, PJ., Horn, BJ., . . . French, NP. (2021). Source attributed case-control study of campylobacteriosis in New Zealand. International Journal of Infectious Diseases. 103, 268-277
[Journal article]Authored by: Benschop, J., French, N., Marshall, J., Midwinter, A.
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Jefferies, S., French, N., Gilkison, C., Graham, G., Hope, V., Marshall, J., . . . Priest, P. (2020). COVID-19 in New Zealand and the impact of the national response: a descriptive epidemiological study. The Lancet Public Health. 5(11), e612-e623
[Journal article]Authored by: French, N., Marshall, J.
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Dittmer, KE., Heathcott, RW., Marshall, JC., & Azarpeykan, S. (2020). Expression of phosphatonin-related genes in sheep, dog and horse kidneys using quantitative reverse transcriptase pcr. Animals. 10(10), 1-11
[Journal article]Authored by: Dittmer, K., Marshall, J.
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Toombs-Ruane, LJ., Benschop, J., French, NP., Biggs, PJ., Midwinter, AC., Marshall, JC., . . . Burgess, SA. (2020). Carriage of Extended-Spectrum-Beta-Lactamase- and AmpC Beta-Lactamase-Producing Escherichia coli Strains from Humans and Pets in the Same Households. Applied and Environmental Microbiology. 86(24), 1-15
[Journal article]Authored by: Benschop, J., Biggs, P., Burgess, S., Douwes, J., Fayaz, A., French, N., Marshall, J., Midwinter, A.
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Bojani膰, K., Acke, E., Roe, WD., Marshall, JC., Cornelius, AJ., Biggs, PJ., . . . Midwinter, AC. (2020). Comparison of the pathogenic potential of campylobacter jejuni, C. Upsaliensis and c. helveticus and limitations of using larvae of galleria mellonella as an infection model. Pathogens. 9(9), 1-15
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A., Roe, W.
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Davys, G., Marshall, JC., Fayaz, A., Weir, RP., & Benschop, J. (2020). Campylobacteriosis associated with the consumption of unpasteurised milk: Findings from a sentinel surveillance site. Epidemiology and Infection.
[Journal article]Authored by: Benschop, J., Fayaz, A., Marshall, J.
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Bojani膰, K., Midwinter, AC., Acke, E., Marshall, JC., Cornelius, AJ., & Biggs, PJ. (2020). Draft genome sequences of eight strains of campylobacter helveticus isolated from cats and a dog in New Zealand. Microbiology Resource Announcements. 9(5)
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.
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Nohra, A., Grinberg, A., Marshall, JC., Midwinter, AC., Collins-Emerson, JM., & Frencha, NP. (2020). Shifts in the molecular epidemiology of campylobacter jejuni infections in a sentinel region of new zealand following implementation of food safety interventions by the poultry industry. Applied and Environmental Microbiology. 86(5)
[Journal article]Authored by: Collins-Emerson, J., French, N., Grinberg, A., Marshall, J., Midwinter, A.
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Pemberton, S., Odom, TF., Dittmer, KE., Kopke, MA., Marshall, JC., Poirier, VJ., . . . Owen, MC. (2020). The hypoattenuating ocular lens on CT is not always due to cataract formation. Veterinary Radiology and Ultrasound. 61(2), 147-156
[Journal article]Authored by: Dittmer, K., Marshall, J., Odom, T.
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Reed Hranac, C., Marshall, JC., Monadjem, A., & Hayman, DTS. (2019). Predicting Ebola virus disease risk and the role of African bat birthing. Epidemics. 29
[Journal article]Authored by: Hayman, D., Marshall, J.
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Muylaert, RL., Sabino-Santos, G., Prist, PR., Oshima, JEF., Niebuhr, BB., Sobral-Souza, T., . . . Ribeiro, MC. (2019). Spatiotemporal dynamics of hantavirus cardiopulmonary syndrome transmission risk in Brazil. Viruses. 11(11)
[Journal article]Authored by: de Lara Muylaert, R., Hayman, D., Marshall, J.
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Shrestha, RD., Midwinter, AC., Marshall, JC., Collins-Emerson, JM., Pleydell, EJ., & French, NP. (2019). Campylobacter jejuni strains associated with wild birds and those causing human disease in six high-use recreational waterways in New Zealand. Applied and Environmental Microbiology. 85(24)
[Journal article]Authored by: Collins-Emerson, J., French, N., Marshall, J., Midwinter, A.
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Cookson, AL., Lacher, DW., Scheutz, F., Wilkinson, DA., Biggs, PJ., Marshall, JC., . . . Brightwell, G. (2019). GndDb, a Database of Partial gnd Sequences to Assist with Analysis of Escherichia coli Communities Using High-Throughput Sequencing. Microbiology Resource Announcements. 8(33)
[Journal article]Authored by: Biggs, P., Marshall, J.
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Bloomfield, S., Vaughan, T., Benschop, J., Marshall, J., Hayman, D., Biggs, P., . . . French, N. (2019). Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks. PLoS One. 14(7), Retrieved from https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0214169
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J.
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Bloomfield, S., Vaughan, T., Benschop, J., Marshall, J., Hayman, D., Biggs, P., . . . French, N. (2019). Investigation of the validity of two Bayesian ancestral state reconstruction models for estimating Salmonella transmission during outbreaks. PLoS ONE. 14(7)
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J.
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Browne, AS., Biggs, PJ., Wilkinson, DA., Cookson, AL., Midwinter, AC., Bloomfield, SJ., . . . French, NP. (2019). Use of genomics to investigate historical importation of shiga toxin-producing Escherichia coli serogroup O26 and nontoxigenic variants into New Zealand. Emerging Infectious Diseases. 25(3), 489-500
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.
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Wheeler, NE., Blackmore, T., Reynolds, AD., Midwinter, AC., Marshall, J., French, NP., . . . Biggs, PJ. (2019). Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni. Microbial Genomics. 5(2)
[Journal article]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A., Savoian, M.
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Liao, SJ., Marshall, J., Hazelton, ML., & French, NP. (2019). Extending statistical models for source attribution of zoonotic diseases: A study of campylobacteriosis. Journal of the Royal Society Interface. 16(150)
[Journal article]Authored by: French, N., Marshall, J.
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Bojani膰, K., Midwinter, AC., Marshall, JC., Biggs, PJ., & Acke, E. (2019). Isolation of emerging Campylobacter species in working farm dogs and their frozen home-killed raw meat diets. Journal of Veterinary Diagnostic Investigation. 31(1), 23-32
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.
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Gal, A., Burchell, RK., Worth, AJ., Lopez-Villalobos, N., Marshall, JC., & MacNeill, AL. (2018). The Site of Bone Marrow Acquisition Affects the Myeloid to Erythroid Ratio in Apparently Healthy Dogs. Veterinary Pathology. 55(6), 853-860 Retrieved from https://journals.sagepub.com/doi/10.1177/0300985818780469
[Journal article]Authored by: Lopez-Villalobos, N., Marshall, J., Worth, A.
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Wilkinson, DA., Marshall, JC., French, NP., & Hayman, DTS. (2018). Habitat fragmentation, biodiversity loss and the risk of novel infectious disease emergence. Journal of the Royal Society Interface. 15(149)
[Journal article]Authored by: French, N., Hayman, D., Marshall, J.
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Muellner, P., Hodges, D., Ahlstrom, C., Newman, M., Davidson, R., Pfeiffer, D., . . . Morley, C. (2018). Creating a framework for the prioritization of biosecurity risks to the New Zealand dairy industry. Transboundary and Emerging Diseases. 65(4), 1067-1077
[Journal article]Authored by: Marshall, J.
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Matthews, ZM., Collett, MG., Marshall, JC., Partridge, AC., Derrick, PJ., & Edwards, PJB. (2018). Effect of a one-off sporidesmin challenge on the milk production of dairy cows. New Zealand Veterinary Journal. 66(5), 261-266
[Journal article]Authored by: Edwards, P., Marshall, J.
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Nohra, A., Grinberg, A., Midwinter, AC., Marshall, JC., Collins-Emerson, JM., & French, NP. (2018). Exposure to whole chicken carcasses may present a greater risk of campylobacteriosis compared to exposure to chicken drumsticks. Zoonoses and Public Health. 65(7), 822-830
[Journal article]Authored by: Collins-Emerson, J., French, N., Grinberg, A., Marshall, J., Midwinter, A.
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Jaros, P., Cookson, AL., Reynolds, A., Withers, H., Clemens, R., Brightwell, G., . . . French, NP. (2018). The effect of transportation and lairage on faecal shedding and carcass contamination with Escherichia coli O157 and O26 in very young calves in New Zealand. Epidemiology and Infection. 146(9), 1089-1100
[Journal article]Authored by: French, N., Marshall, J.
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Browne, AS., Midwinter, AC., Withers, H., Cookson, AL., Biggs, PJ., Marshall, JC., . . . French, NP. (2018). Molecular epidemiology of Shiga toxinproducing Escherichia coli (STEC) on New Zealand dairy farms: Application of a culture-independent assay and whole-genome sequencing. Applied and Environmental Microbiology. 84(14)
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.
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Matthews, ZM., Edwards, PJB., Kahnt, A., Collett, MG., Marshall, JC., Partridge, AC., . . . Derrick, PJ. (2018). Serum metabolomics using ultra performance liquid chromatography coupled to mass spectrometry in lactating dairy cows following a single dose of sporidesmin. Metabolomics. 14(5)
[Journal article]Authored by: Edwards, P., Marshall, J.
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Lal, A., Marshall, J., Benschop, J., Brock, A., Hales, S., Baker, MG., . . . French, NP. (2018). A Bayesian spatio-temporal framework to identify outbreaks and examine environmental and social risk factors for infectious diseases monitored by routine surveillance. Spatial and Spatio-temporal Epidemiology. 25, 39-48
[Journal article]Authored by: Benschop, J., French, N., Marshall, J.
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Davies, TM., Marshall, JC., & Hazelton, ML. (2018). Tutorial on kernel estimation of continuous spatial and spatiotemporal relative risk. Statistics in Medicine. 37(7), 1191-1221
[Journal article]Authored by: Marshall, J.
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Bloomfeld, SJ., Midwinter, AC., Biggs, PJ., French, NP., Marshall, JC., Hayman, DTS., . . . Benschop, J. (2018). Long-term colonization by campylobacter jejuni within a human host: Evolution, antimicrobial resistance, and adaptation. Journal of Infectious Diseases. 217(1), 103-111
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.
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Hayman, DTS., Marshall, JC., French, NP., Carpenter, TE., Roberts, MG., & Kiedrzynski, T. (2017). Cost-benefit analyses of supplementary measles immunisation in the highly immunized population of New Zealand. Vaccine. 35(37), 4913-4922
[Journal article]Authored by: French, N., Hayman, D., Marshall, J.
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Miller, P., Marshall, J., French, N., & Jewell, C. (2017). sourceR: Classification and source attribution of infectious agents among heterogeneous populations. PLoS Computational Biology. 13(5)
[Journal article]Authored by: French, N., Marshall, J.
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Bloomfield, SJ., Benschop, J., Biggs, PJ., Marshall, JC., Hayman, DTS., Carter, PE., . . . French, NP. (2017). Genomic analysis of salmonella enterica serovar Typhimurium DT160 associated with a 14-year outbreak, New Zealand, 1998–2012. Emerging Infectious Diseases. 23(6), 906-913
[Journal article]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.
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Hayman, DTS., Marshall, JC., French, NP., Carpenter, TE., Roberts, MG., & Kiedrzynski, T. (2017). Global importation and population risk factors for measles in New Zealand: A case study for highly immunized populations. Epidemiology and Infection. 145(9), 1875-1885
[Journal article]Authored by: French, N., Hayman, D., Marshall, J.
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Mohan, V., Stevenson, MA., Marshall, JC., & French, NP. (2017). Characterisation by multilocus sequence and porA and flaA typing of Campylobacter jejuni isolated from samples of dog faeces collected in one city in New Zealand. New Zealand Veterinary Journal. 65(4), 209-213
[Journal article]Authored by: French, N., Marshall, J.
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Cookson, AL., Biggs, PJ., Marshall, JC., Reynolds, A., Collis, RM., French, NP., . . . Brightwell, G. (2017). Culture independent analysis using gnd as a target gene to assess Escherichia coli diversity and community structure. Scientific Reports. 7(1)
[Journal article]Authored by: Biggs, P., French, N., Marshall, J.
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Irshad, H., Cookson, AL., Prattley, DJ., Marshall, J., & French, NP. (2017). Epidemiology of Escherichia coli serogroups O26, O103, O111 and O145 in very young ('bobby') calves in the North Island, New Zealand. Epidemiology and Infection. 145(8), 1606-1616
[Journal article]Authored by: French, N., Marshall, J.
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Bojani膰, K., Midwinter, AC., Marshall, JC., Rogers, LE., Biggs, PJ., & Acke, E. (2017). Isolation of Campylobacter spp. from Client-Owned Dogs and Cats, and Retail Raw Meat Pet Food in the Manawatu, New Zealand. Zoonoses and Public Health. 64(6), 438-449
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.
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Azarpeykan, S., Dittmer, KE., Marshall, JC., Perera, KC., Gee, EK., Acke, E., . . . Thompson, KG. (2016). Evaluation and Comparison of Vitamin D responsive gene expression in ovine, canine and equine kidney. PLoS ONE. 11(9)
[Journal article]Authored by: Dittmer, K., Gee, E., Marshall, J.
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Bojani膰, K., Midwinter, AC., Marshall, JC., Rogers, LE., Biggs, PJ., & Acke, E. (2016). Variation in the limit-of-detection of the ProSpecT Campylobacter microplate enzyme immunoassay in stools spiked with emerging Campylobacter species. Journal of Microbiological Methods. 127, 236-241
[Journal article]Authored by: Biggs, P., Marshall, J., Midwinter, A.
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Marshall, JC., Soboleva, TK., Jamieson, P., & French, NP. (2016). Estimating bacterial pathogen levels in New Zealand bulk tank milk. Journal of Food Protection. 79(5), 771-780
[Journal article]Authored by: French, N., Marshall, J.
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Azarpeykan, S., Dittmer, KE., Gee, EK., Marshall, JC., Wallace, J., Elder, P., . . . Thompson, KG. (2016). Influence of blanketing and season on vitamin D and parathyroid hormone, calcium, phosphorus, and magnesium concentrations in horses in New Zealand. Domestic Animal Endocrinology. 56, 75-84
[Journal article]Authored by: Dittmer, K., Gee, E., Marshall, J.
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Irshad, H., Cookson, AL., Ross, CM., Jaros, P., Prattley, DJ., Donnison, A., . . . French, NP. (2016). Diversity and relatedness of Shiga toxin-producing Escherichia coli and Campylobacter jejuni between farms in a dairy catchment. Epidemiology and Infection. 144(7), 1406-1417
[Journal article]Authored by: French, N., Marshall, J.
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Azarpeykan, S., Dittmer, KE., Gee, EK., Marshall, JC., Elder, P., Acke, E., . . . Thompson, KG. (2016). Circadian rhythm of calciotropic hormones, serum calcium, phosphorus and magnesium during the shortest and longest days of the year in horses in New Zealand. Journal of Animal Physiology and Animal Nutrition. 100(6), 1058-1066
[Journal article]Authored by: Dittmer, K., Gee, E., Marshall, J.
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Hayman, DTS., Pulliam, JRC., Marshall, JC., Cryan, PM., & Webb, CT. (2016). Environment, host, and fungal traits predict continental-scale white-nose syndrome in bats. Science Advances. 2(1)
[Journal article]Authored by: Hayman, D., Marshall, J.
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Friedrich, A., Marshall, JC., Biggs, PJ., Midwinter, AC., & French, NP. (2016). Seasonality of Campylobacter jejuni isolates associated with human campylobacteriosis in the Manawatu region, New Zealand. Epidemiology and Infection. 144(4), 820-828
[Journal article]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.
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Grange, ZL., Gartrell, BD., Biggs, PJ., Nelson, NJ., Marshall, JC., Howe, L., . . . French, NP. (2015). Using a common commensal bacterium in endangered Takahe as a model to explore pathogen dynamics in isolated wildlife populations. Conservation Biology. 29(5), 1327-1336
[Journal article]Authored by: Biggs, P., French, N., Gartrell, B., Howe, L., Marshall, J.
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Roe, WD., Rogers, L., Pinpimai, K., Dittmer, K., Marshall, J., & Chilvers, BL. (2015). Septicaemia and meningitis caused by infection of New Zealand sea lion pups with a hypermucoviscous strain of Klebsiella pneumoniae. Veterinary Microbiology. 176(3-4), 301-308
[Journal article]Authored by: Chilvers, B., Dittmer, K., Marshall, J., Roe, W.
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Al Mawly, J., Grinberg, A., Prattley, D., Moffat, J., Marshall, J., & French, N. (2015). Risk factors for neonatal calf diarrhoea and enteropathogen shedding in New Zealand dairy farms. Veterinary Journal. 203(2), 155-160
[Journal article]Authored by: French, N., Grinberg, A., Marshall, J.
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Jaros, P., Cookson, AL., Campbell, DM., Duncan, GE., Prattley, D., Carter, P., . . . French, NP. (2014). Geographic divergence of bovine and human Shiga toxin–producing Escherichia coli O157:H7 genotypes, New Zealand. Emerging Infectious Diseases. 20(12), 1980-1989
[Journal article]Authored by: French, N., Marshall, J.
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Roe, WD., Mayhew, IG., Jolly, RD., Marshall, J., & Chilvers, BL. (2014). Traumatic brain injury, axonal injury and shaking in New Zealand sea lion pups. Veterinary Journal. 200(1), 96-102
[Journal article]Authored by: Chilvers, B., Marshall, J., Roe, W.
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1
Jaros, P., Cookson, AL., Campbell, DM., Besser, TE., Shringi, S., Mackereth, GF., . . . French, NP. (2013). A prospective case-control and molecular epidemiological study of human cases of Shiga toxin-producing Escherichia coli in New Zealand. BMC Infectious Diseases. 13(1)
[Journal article]Authored by: French, N., Marshall, J.
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Jolly, RD., Marshall, NR., Marshall, J., Hartman, A., Hemsley, KM., & Winner, LK. (2013). Intracisternal enzyme replacement therapy in lysosomal storage diseases: Dispersal pathways, regional enzyme concentrations and the effect of posttreatment posture. Neuropathology and Applied Neurobiology. 39(6), 681-692
[Journal article]Authored by: Marshall, J.
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Thornley, CN., Hewitt, J., Perumal, L., Van Gessel, SM., Wong, J., David, SA., . . . Greening, GE. (2013). Multiple outbreaks of a novel norovirus GII.4 linked to an infected post-symptomatic food handler. Epidemiology and Infection. 141(8), 1585-1597
[Journal article]Authored by: Marshall, J.
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Mohan, V., Stevenson, M., Marshall, J., Fearnhead, P., Holland, BR., Hotter, G., . . . French, NP. (2013). Campylobacter jejuni colonization and population structure in urban populations of ducks and starlings in New Zealand. MicrobiologyOpen. 2(4), 659-673
[Journal article]Authored by: French, N., Marshall, J.
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Gilpin, BJ., Walsh, G., On, SL., Smith, D., Marshall, JC., & French, NP. (2013). Application of molecular epidemiology to understanding campylobacteriosis in the Canterbury region of New Zealand. Epidemiology and Infection. 141(6), 1253-1266
[Journal article]Authored by: French, N., Marshall, J.
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Dittmer, KE., Jenkins, KS., Kwan, E., Marshall, JC., & Tasker, S. (2013). PREVALENCE AND RISK FACTOR ANALYSIS OF FELINE HAEMOPLASMA INFECTION IN NEW ZEALAND DOMESTIC CATS. JOURNAL OF COMPARATIVE PATHOLOGY. 148(1), 53-53
[Journal article]Authored by: Dittmer, K., Marshall, J.
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Spencer, SEF., Marshall, J., Pirie, R., Campbell, D., Baker, MG., & French, NP. (2012). The spatial and temporal determinants of campylobacteriosis notifications in New Zealand, 2001-2007. Epidemiology and Infection. 140(9), 1663-1677
[Journal article]Authored by: French, N., Marshall, J.
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Howe, L., Collett, MG., Pattison, RS., Marshall, J., West, DM., & Pomroy, WE. (2012). Potential involvement of Neospora caninum in naturally occurring ovine abortions in New Zealand. Veterinary Parasitology. 185(2-4), 64-71
[Journal article]Authored by: Howe, L., Marshall, J.
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Baker, MG., Sears, A., Wilson, N., French, N., Marshall, J., Muellner, P., . . . Lake, R. (2011). Keep the focus on contaminated poultry to further curtail New Zealand's campylobacteriosis epidemic. New Zealand Medical Journal. 124(1338), 135-139
[Journal article]Authored by: French, N., Marshall, J.
1
Spencer, SEF., Marshall, J., Pirie, R., Campbell, D., & French, NP. (2011). The detection of spatially localised outbreaks in campylobacteriosis notification data. Spatial and Spatio-temporal Epidemiology. 2(3), 173-183
[Journal article]Authored by: French, N., Marshall, J.
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Muellner, P., Marshall, JC., Spencer, SEF., Noble, AD., Shadbolt, T., Collins-Emerson, JM., . . . French, NP. (2011). Utilizing a combination of molecular and spatial tools to assess the effect of a public health intervention. Preventive Veterinary Medicine. 102(3), 242-253
[Journal article]Authored by: Collins-Emerson, J., French, N., Marshall, J., Midwinter, A.
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Sears, A., Baker, MG., Wilson, N., Marshall, J., Muellner, P., Campbell, DM., . . . French, NP. (2011). Marked campylobacteriosis decline after interventions aimed at poultry, New Zealand. Emerging Infectious Diseases. 17(6), 1007-1015
[Journal article]Authored by: French, N., Marshall, J.
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Davies, TM., Hazelton, ML., & Marshall, JC. (2011). sparr: Analyzing spatial relative risk using fixed and adaptive kernel density estimation in R. Journal of Statistical Software. 39(1), 1-14
[Journal article]Authored by: Marshall, J.
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Dittmer, KE., Firth, EC., Thompson, KG., Marshall, JC., & Blair, HT. (2011). Changes in bone structure of Corriedale sheep with inherited rickets: A peripheral quantitative computed tomography assessment. Veterinary Journal. 187(3), 369-373
[Journal article]Authored by: Blair, H., Dittmer, K., Marshall, J.
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Marshall, JC., & Hazelton, ML. (2010). Boundary kernels for adaptive density estimators on regions with irregular boundaries. Journal of Multivariate Analysis. 101(4), 949-963
[Journal article]Authored by: Marshall, J.
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Mullner, P., Shadbolt, T., Collins-Emerson, JM., Midwinter, AC., Spencer, SEF., Marshall, J., . . . French, NP. (2010). Molecular and spatial epidemiology of human campylobacteriosis: Source association and genotype-related risk factors. Epidemiology and Infection. 138(10), 1372-1383
[Journal article]Authored by: Collins-Emerson, J., French, N., Marshall, J., Midwinter, A.
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Hazelton, ML., & Marshall, JC. (2009). Linear boundary kernels for bivariate density estimation. Statistics and Probability Letters. 79(8), 999-1003
[Journal article]Authored by: Marshall, J.
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Marshall, JC., van-Brunt, B., & Wake, GC. (2004). A natural boundary for solutions to the second order pantograph equation. Journal of Mathematical Analysis and Applications. 299(2), 314-321
[Journal article]Authored by: Marshall, J., Van Brunt, B.
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van Brunt, B., Marshall, JC., & Wake, GC. (2004). Holomorphic solutions to pantograph type equations with neutral fixed points. Journal of Mathematical Analysis and Applications. 295(2), 557-569
[Journal article]Authored by: Marshall, J., Van Brunt, B.
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Van Brunt, B., Marshall, JC., & Wake, GC. (2003). An Eigenvalue problem for holomorphic solutions to a certain class of functional differential equations. European Journal of Applied Mathematics. 14(5), 571-585
[Journal article]Authored by: Marshall, J., Van Brunt, B.
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Marshall, JC., Van Brunt, B., & Wake, GC. (2002). Natural boundaries for solutions to a certain class of functional differential equations. Journal of Mathematical Analysis and Applications. 268(1), 157-170
[Journal article]Authored by: Marshall, J., Van Brunt, B.
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Thesis

Matthews, ZM. (2016). The search for biomarkers of facial eczema, following a sporidesmin challenge in dairy cows, using mass spectrometry and nuclear magnetic resonance of serum, urine, and milk. (Doctoral Thesis, 羞羞视频, New Zealand) Matthews, ZM. (2016). The search for biomarkers of facial eczema, following a sporidesmin challenge in dairy cows, using mass spectrometry and nuclear magnetic resonance of serum, urine, and milk. (Doctoral Thesis)
[Doctoral Thesis]Edited by: Edwards, P., Marshall, J.
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Report

Vallee, E., Wada, M., Cogger, N., Kelly, V., Marshall, J., Benschop, J., . . . Tait, A.(2021). Effects of climate change on grazing livestock health in New Zealand. (Report No. 2021/10).
[Technical Report]Authored by: Benschop, J., Cogger, N., Marshall, J., Vallee, E., Wada, M.
Marshall, JC., & French, NP. (2015). Source attribution January to December 2014 of human Campylobacter jejuni cases from the Manawatu.
[Commissioned Report]Authored by: French, N., Marshall, J.
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French, NP., Marshall, JC., & Mohan, V. (2011). Campylobacter in food and the environment: New and emerging data on typing of Campylobacter spp. strains in animals, environmental matrices and humans. ( Report No. 07-10436). New Zealand Food Safety Authority, Ministry for the Environment.
[Commissioned Report]Authored by: French, N., Marshall, J.
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Marshall, JC., & French, NP. (2011). Campylobacter in food and the environment: Modelling of Campylobacter carriage and transmission between and within animal groups. ( Report No. 07-10436). New Zealand Food Safety Authority, Ministry for the Environment.
[Commissioned Report]Authored by: French, N., Marshall, J.
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McBride, G., Ball, A., French, NP., Marshall, JC., Harper, S., Horn, B., . . . van der Logt, P. (2011). Campylobacter in food and the environment: Examining the link with public health. New Zealand Food Safety Authority, Ministry for the Environment.
[Commissioned Report]Authored by: French, N., Marshall, J.
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Benschop, J., Brock, A., Jones, G., Marshall, J., & French, N. (2011). Milestone 1.1.4 report- Construct models for projecting disease incidence. ( Report No. 1.1.4). FRST.
[Commissioned Report]Authored by: Benschop, J., French, N., Marshall, J.
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French, N., Leader, D., Hazelton, M., Marshall, J., & Benschop, J. (2011). Development and application of new tools for the analysis of salmonella surveillance data identifying the spatial and temporal determinants of raised notifications in New Zealand. ( Report No. SCIG-MAS-001). New Zealand Food Safety Authority.
[Commissioned Report]Authored by: Benschop, J., French, N., Leader, D., Marshall, J.
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French, NP., & Marshall, JC. (2009). Dynamic modelling of Campylobacter sources in the Manawatu. ( Report No. 11178). New Zealand Food Safety Authority.
[Commissioned Report]Authored by: French, N., Marshall, J.
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Marshall, JC., Spencer, SEF., & French, NP. (2009). Development and application of new tools for the analysis of Campylobacter surveillance data: identifying the spatial and temporal determinants of raised notifications in New Zealand. ( Report No. SCIG-MAS-001). New Zealand Food Safety Authority.
[Commissioned Report]Authored by: French, N., Marshall, J.
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Hayman, DTS., Marshall, JC., French, NP., Carpenter, TE., & Roberts, MG.Measles Risk assessment, modelling, and benefit-cost analyses for New Zealand.
[Commissioned Report]Authored by: French, N., Hayman, D., Marshall, J.

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Conference

Matthews, Z., Collett, M., Edwards, P., Marshall, J., Kahnt, A., Fraser, K., . . . Derrick, P. (2018). The search for biomarkers of facial eczema following a sporidesmin challenge in dairy cows. In Proceedings of the 10th International Symposium on Poisonous Plants (ISOPP 10)(pp. 60 - 60). , 10th International Symposium on Poisonous Plants (ISOPP 10)
[Conference Abstract]Authored by: Edwards, P., Marshall, J.
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Hranac, CR., Klug-Baerwald, BJ., Dzal, YA., Lausen, C., Marshall, JC., Olson, SH., . . . Hayman, D. (2017). Modeling the impact of White-nose syndrome on two western bat species. (pp. 35 - 35). , Infectious Diseases of Bats Symposium
[Conference Abstract]Authored by: Hayman, D., Marshall, J.
Wheeler, N., Biggs, PJ., Blackmore, T., Reynolds, A., Midwinter, A., Marshall, J., . . . French, N. (2017). Identification of genomic changes associated with invasiveness in campylobacter jejuni. , 19th International workshop on campylobacter, Helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.
Cornelius, A., Biggs, PJ., Hayman, D., French, N., Draper, J., Wilkinson, D., . . . Gilpin, B. (2017). use of genotyping tools to characterise and investigate the New Zealand Havelock North campylobacteriosis outbreak. , 19th international workshop on campylobacter, helicobacter and related organisms
[Conference Abstract]Authored by: Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.
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Liao, SJ., Marshall, JC., French, NP., & Hazelton, M. (2017). Chickens in the city, cows and sheep in the country: A simple model for the source of campylobacteriosis.. Poster session presented at the meeting of 19th International Workshop on Campylobacter, Helicobacter and Related Organisms. Nantes, France
[Conference Poster]Authored by: French, N., Marshall, J.
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Marshall, JC., & Johnson, E. (2017). Finding outbreaks in the notification haystack: Campylobacteriosis surveillance in two regions of New Zealand. Poster session presented at the meeting of 19th International Workshop on Campylobacter, Helicobacter and Related Organisms. Nantes, France
[Conference Poster]Authored by: Marshall, J.
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Wilkinson, DA., Zhang, J., Biggs, P., Marshall, J., & French, N. (2017). How open is the Campylobacter genome?. Poster session presented at the meeting of CHRO 2017. Nantes, France
[Conference Poster]Authored by: Biggs, P., French, N., Marshall, J.
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Gal, A., Burchell, RK., Worth, AJ., Lopez-Villallobos, N., Marshall, JC., & MacNeill, AL.The Site of Bone Marrow Acquisition Affects the Myeloid to Erythroid Ratio in Apparently Healthy Dogs.
[Conference Oral Presentation]Authored by: Lopez-Villalobos, N., Marshall, J., Worth, A.
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Sammarro, M., Friedrich, A., Marshall, J., Biggs, P., French, N., & Vignes, MCL.Revealing the genetic basis for host-pathogen interaction using machine learning. Paper presented at the meeting of JOURNÉES OUVERTES DE BIOLOGIE INFORMATIQUE & MATHÉMATIQUES. Lyon, France
[Conference Paper]Authored by: Biggs, P., French, N., Marshall, J., Vignes, M.
Browne, A., Midwinter, A., Withers, H., Cookson, A., Biggs, P., Marshall, J., . . . French, N. (2016). Epidemiology of shiga toxin-producing E. coli (STEC) on New Zealand dairy farms using new molecular and genomic technologies. 2016 Proceedings of Food Safety, Animal Welfare and Biosecurity Branch of the NZVA Conference. (pp. 21 - 25). Palmerston North, New Zealand: Food Safety, Animal Welfare and Biosecurity Branch of the New Zealand Veternary Animal Science Conference
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., French, N., Marshall, J., Midwinter, A.
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Sammarro, M., Schrefheere, A., Biggs, P., marshall, J., Tate, J., Cox, M., . . . Vignes, MCL. (2016). Challenges and leads for modelling complex molecular biological systems. Poster session presented at the meeting of Complex Networks and Applications 2016 workshop. Marseilles, France
[Conference Poster]Authored by: Biggs, P., French, N., Marshall, J., Tate, J., Vignes, M.
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Nohra, A., Grinberg, A., Midwinter, AC., Marshall, JC., Collins-Emerson, JM., & French, NP. (2016). Molecular epidemiology of Campylobacter coli strains isolated from different sources in New Zealand between 2005 and 2014.
[Conference Poster]Authored by: Collins-Emerson, J., French, N., Grinberg, A., Marshall, J., Midwinter, A.
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Bloomfield, S., Benschop, J., Midwinter, AC., Biggs, P., Marshall, J., Hayman, D., . . . French, N. (2015). Evolution of Campylobacter in a persistently infected human host. : 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., French, N., Hayman, D., Marshall, J., Midwinter, A.
Bojanic, K., Midwinter, AC., Biggs, PJ., Marshall, JC., & Acke, E. (2015). Pathogenicity of Campylobacter jejuni, C. upsaliensis and C. helveticus in the invertebrate disease model Galleria mellonella. Proceedings of the 18th International workshop on Campylobacter, Helicobacter & Related Organisms. (pp. 38 - 38). New Zealand: 18th International Conference on Campylobacter, Helicobacter, and Related Organisms
[Conference Paper in Published Proceedings]Authored by: Biggs, P., Marshall, J., Midwinter, A.Contributed to by: Midwinter, A.
Friedrich, A., Marshall, JC., Biggs, PJ., Midwinter, AC., & French, NP. (2015). Short-term evolutionary dynamics of Campylobacter jejuni in chickens. Poster session presented at the meeting of 18th International workshop on Campylobacter, Helicobacter and Related Organisms. Rotorua, New Zealand
[Conference Poster]Authored by: Biggs, P., French, N., Marshall, J., Midwinter, A.
Jaros, P., Cookson, A., Campbell, D., Duncan, G., Prattley, D., Besser, T., . . . French, N. (2014, October). Geographic divergence of bovine and human Shiga toxin-producing Escherichia coli O157:H7 genotypes in New Zealand. Presented at Australasian Epidemiological Association Annual Scientific Meeting 2014. Auckland, New Zealand.
[Conference Oral Presentation]Authored by: French, N., Marshall, J.
Jaros, P., Cookson, A., Campbell, D., Duncan, G., Prattley, D., Besser, T., . . . French, N. (2014, June). Between- and within-island divergence of bovine and human Shiga toxin-producing Escherichia coli O157:H7 genotypes in New Zealand. Presented at New Zealand Veterinary Association - Annual Conference. Hamilton, New Zealand.
[Conference Oral Presentation]Authored by: French, N., Marshall, J.
Jaros, P., Cookson, A., Campbell, D., Duncan, G., Prattley, D., Besser, T., . . . French, N. (2014). International divergence of bovine and human Shiga toxin-producing Escherichia coli O157:H7 genotypes. Poster session presented at the meeting of International Association for Food Protection (IAFP) 2014. Indianapolis, Indiana, USA
[Conference Poster]Authored by: French, N., Marshall, J.
Azarpeykan, S., Gee, EK., Thompson, KG., Acke, E., Marshall, JC., & Dittmer, KE. (2014). Vitamin d status of covered and non-covered horses at pasture. Proceedings of the Australasian Equine Science Symposium. Vol. 5 (pp. 33). : Australasian equine science symposium
[Conference Paper in Published Proceedings]Authored by: Dittmer, K., Gee, E., Marshall, J.
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Marshall, JC. (2013, November). Determining the source of human campylobacteriosis cases through time. Presented at 2013 Joint New Zealand Statistics Association conference. Waikato University.
[Conference Oral Presentation]Authored by: Marshall, J.
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Bojanic, K., Midwinter, A., Marshall, J., Biggs, P., Benschop, J., & Acke, E. (2013, September). Comparison of culture methods for campylobacter spp. in working farm dogs and their home-kill meat diets. Presented at 17th International Workshop on Campylobacter, Helicobacter and related organisms. Aberdeen, United Kingdom.
[Conference Oral Presentation]Authored by: Benschop, J., Biggs, P., Marshall, J., Midwinter, A.
Binney, B., Biggs, P., Carter, P., Holland, B., Marshall, J., & French, N. (2013, September). Carbon utilisation in campylobacter jejuni is affected by temperature and host generalist or specialist lifestlye. Presented at 17th International workshop on Campylobacter, Helicobacter and related organisms. Aberdeen, Scotland.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Marshall, J.
Bojanic, K., Midwinter, AC., Biggs, P., Marshall, J., Benschop, J., Cave, N., . . . Acke, E. (2013). Salmonella,E.coli and campylobacter spp. in working farm dogs in New Zealand and their home-kill diets. In P. Angus-Cook, K. Crews, N. Dymond, N. Harding, J. Hunnam, S. Marshall, . . . V. Williams (Eds.) Proceedings of the New Zealand Veterinary Association Annual Conference. (pp. 13 - 14). : New Zealand Veterinary Association Annual Conference, The Science Behind Veterinary Practice
[Conference Paper in Published Proceedings]Authored by: Benschop, J., Biggs, P., Marshall, J., Midwinter, A.
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Marshall, JC. (2013). New tools for outbreak surveillance. In P. Angus-Cook, K. Crews, N. Dymond, N. Harding, J. Hunnam, S. Marshall, . . . V. Williams (Eds.) Proceedings of The New Zealand Veterinary Association Annual Conference. (pp. 189). : New Zealand Veterinary Association Annual Conference
[Conference Paper in Published Proceedings]Authored by: Marshall, J.
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Jenkins, KS., Dittmer, KE., Marshall, JC., & Tasker, S. (2013). Prevalence and risk factor analysis of feline haemoplasma infection in New Zealand domestic cats using a real-time PCR assay. In Journal of Feline Medicine and Surgery Vol. 15 (pp. 1063 - 1069).
[Conference Abstract]Authored by: Dittmer, K., Marshall, J.
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French, N., Biggs, P., & Marshall, J. (2012). From takahe and microarrays to the Reverent Bayes - the work of the molecular epidemiology and public health laboratory(mEpiLab). In First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 18). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, 羞羞视频
[Conference Abstract]Authored by: Biggs, P., French, N., Marshall, J.
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French, N., Biggs, P., & Marshall, J. (2012, October). From takahe and microarrays to the Reverend Bayes - the work of the molecular epidemiology and public health laboratory (mEpiLab). Presented at First Infectious Disease Research Centre [IDReC] Science Symposium. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Biggs, P., French, N., Marshall, J.
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Brock, A., Benschop, J., Jones, G., Marshall, J., & French, N. (2012). Future zoonotic disease incidence informed by climate change scenarios. In First Infectious Disease Research Centre [IDReC] Science Symposium: Delegate Handbook(pp. 41 - 41). , First Infectious Disease Research Centre [IDReC] Science Symposium New Zealand: Infectious Disease Research Centre, 羞羞视频
[Conference Abstract]Authored by: Benschop, J., French, N., Marshall, J.
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Matthews, Z., Harrison, S., Marshall, J., Partridge, A., Collett, M., & Derrick, P. (2012). Facial eczema in New Zealand dairy cattle- An investigation incorporating the power of mass spectrometry and nuclear magnetic resonance. Poster session presented at the meeting of 1st Infectious Disease Research Centre (IDReC) Science Symposium. Palmerston North, New Zealand
[Conference Poster]Authored by: Marshall, J.
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Matthews, Z., Harrison, S., Marshall, J., Partridge, A., Collett, M., & Derrick, P. (2012). Poster: Facial eczema in New Zealand dairy cattle: An investigation incorporating the power of mass spectrometry and nuclear magnetic resonance. In 1st Infectious Disease Research Centre [IDRec] Science Symposium: Handbook(pp. 62 - 62). , 1st Infectious Disease Research Centre [IDRec] Science Symposium New Zealand: 羞羞视频
[Conference Abstract]Authored by: Marshall, J.
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Dittmer, K., Jenkins, KS., Kwan, E., Marshall, J., & Tasker, S. (2012, September). Prevalence and risk factor analysis of feline haemoplasma infection in New Zealand domestic cats. Presented at The Joint Congress of the 30th Meeting of the European Society of Veterinary Pathology [ESVP] and the European College of Veterinary Pathologists [ECVP] and the 24th Annual Meeting of the Spanish Society of Veterinary Pathology [SEAPV]. Leon, Spain.
[Conference Oral Presentation]Authored by: Dittmer, K., Marshall, J.
French, N., Mullner, P., Carter, P., Collins-Emerson, JM., Midwinter, A., Spencer, S., . . . Shadbolt, T. (2011, August). The changing epidemiology of campylobacteriosis in New Zealand following interventions in the poultry industry. Presented at 16th International Workshop on Campylobacter, Helicobacter and Related Organisms. Vancouver, Canada.
[Conference Oral Presentation]Authored by: Collins-Emerson, J., French, N., Marshall, J., Midwinter, A.
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French, N., Mullner, P., Carter, P., Collins-Emerson, JM., Midwinter, A., Spencer, S., . . . Campbell, D.(2011, August 28). The changing epidemiology of campylobacteriosis in New Zealand following interventions in the poultry industry. (pp. 31 - 31). , 16th International Workshop on Campylobacter, Helicobacter and Related Organsims
[Conference Abstract]Authored by: Collins-Emerson, J., French, N., Marshall, J., Midwinter, A.
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Marshall, JC. (2011, April). XBMC: From underground to hotels and superyachts. Presented at New Zealand Computer Science Research Student Conference (NZCSRSC) 2011. 羞羞视频, Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Marshall, J.
Marshall, JC., & Hazelton, ML. (2011, August). Boundary kernels for adaptive kernel density estimators. Presented at 62nd Annual Meeting of the New Zealand Statistical Association (NZSA) 2011. Auckland University, Auckland, New Zealand.
[Conference Oral Presentation]Authored by: Marshall, J.
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Marshall, JC., & Hazelton, ML.(2011, August 28). Boundary kernels for adaptive kernel density estimators. (pp. 19 - 19). , 62nd Annual Meeting of the New Zealand Statistical Association (NZSA) 2011
[Conference Abstract]Authored by: Marshall, J.
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Pleydell, EJ., Marshall, JC., Muellner, P., & French, NP. (2011, September). Don’t just blame the chickens – assessing the role of ruminants in New Zealand’s campylobacteriosis disease burden. Presented at 2011 Webster Centre Symposium. Dunedin, New Zealand.
[Conference Oral Presentation]Authored by: French, N., Marshall, J.
Read Abstract: abstract icon
Howe, L., Collett, M., Pattison, R., Marshall, J., West, D., & Pomroy, W. (2010). Investigations into the involvement of Neospora Caninum in unexplained sheep abortions. In The 12th International Congress of Parasitology, The 12th International Congress of Parasitology: World Federation of Parasitologists
[Conference Abstract]Authored by: Marshall, J.
Howe, L., Collett, M., Pattison, R., Marshall, J., West, D., & Pomroy, W. (2010). Investigations into the involvement of Neospora caninum in unexplained sheep abortions. In New Zealand Society for Parasitology Annual Meeting No. 38(pp. 18 - 19). : 羞羞视频
[Conference Abstract]Authored by: Howe, L., Marshall, J.
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Howe, L., Collett, M., Pattison, R., Marshall, J., West, D., & Pomroy, W. (2010, October). Investigations into the involvement of Neospora caninum in unexplained sheep abortions. Presented at New Zealand Society for Parasitology Annual Meeting No. 38. Palmerston North, New Zealand.
[Conference Oral Presentation]Authored by: Howe, L., Marshall, J.
Read Abstract: abstract icon
Howe, L. (2010, August). Investigations into the involvement of Neospora caninum in unexplained sheep abortions. Presented at The XIIth International Congress of Parasitology. Melbourne, VIC, Australia.
[Conference Oral Presentation]Authored by: Howe, L., Marshall, J.
Read Abstract: abstract icon
Howe, LJ., Collett, MG., Pattison, RS., Marshall, JC., West, DM., & Pomroy, WE. (2010). Investigations into the involvement of Neospora caninum in unexplained sheep abortions. In The 12th International Congress of Parasitology, The 12th International Congress of Parasitology: World Federation of Parasitologists, The Australian Society for Parasitology Ltd.
[Conference Abstract]Authored by: Howe, L., Marshall, J.
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Hazelton, ML., Marshall, JC., Fernando, WT., & Davies, TM. (2008, September). Advances in spatial modelling of disease. Presented at The New Zealand Statistical Association 2008 Conference. University of Waikato, Hamilton, NZ.
[Conference Oral Presentation]Authored by: Marshall, J.

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Other

Toombs-Ruane, L., Burgess, S., French, N., Biggs, PJ., Midwinter, A., Marshall, J., . . . Benschop, J. (2017, June). Faecal carriage of ESBL - and AmpC - producing Escherichia coli from co-habiting people and pets. In 7th symposium on antimicrobial resistance in animals and the environment. Presented at Braunschweig, germany.
[Oral Presentation]Authored by: Benschop, J., Biggs, P., Burgess, S., Douwes, J., French, N., Marshall, J., Midwinter, A.
Read Abstract: abstract icon
Hayman, DTS., Marshall, JC., French, NP., Carpenter, TE., & Roberts, MG. (2014). "Measles risk assessment, modelling, and benefit-cost analyses for New Zealand".
[Other]Authored by: French, N., Hayman, D., Marshall, J.
Dittmer, K., Jenkins, K., Hinkson, J., Marshall, J., & Van Andel, M. (2013, November). Haemoplasma infections in New Zealand. In IVABS Research Colloquium 羞羞视频, Palmerston North.
[Oral Presentation]Authored by: Dittmer, K., Marshall, J.
Read Abstract: abstract icon

Uncategorised

Horpiencharoen, W., Muylaert, R., Marshall, J., John, RS., Lynam, A., Riggio, A., . . . Hayman, D.August
[Preprint]Authored by: Hayman, D., Marshall, J.
Read Online:
Horpiencharoen, W., Marshall, J., Muylaert, R., John, RS., & Hayman, D.September
[Preprint]Authored by: Hayman, D., Marshall, J.
Read Online:
Smith, H., Biggs, P., French, N., Smith, ANH., & Marshall, J.SeptemberSmith, HL., Biggs, PJ., French, NP., Smith, ANH., & Marshall, JC.SeptemberNovemberSmith, HL., Biggs, PJ., French, NP., Smith, ANH., & Marshall, JC.NovemberSeptember
[Preprint]Authored by: Biggs, P., French, N., Marshall, J., Smith, A.
Read article at Massey Research Online:
Read Online:

Teaching and Supervision

Teaching Statement

  • 161.221/161.773 Applied Linear Models
  • 161.223 Data Mining
  • 227.212 Animal Production I (Stats)
  • 227.215 Animal Production II (Stats)
  • 193.301 Veterinary Biostatistics and Epidemiology (Stats)
  • 119.728/729 Research Practice, Research Methods (Stats)
Contact Supervisor

Summary of Doctoral Supervision

Position Current Completed
Main Supervisor 1 0
Co-supervisor 4 12

Current Doctoral Supervision

Main Supervisor of:

  • Helen Smith - Doctor of Philosophy
    Source attribution models for whole genome sequencing data

Co-supervisor of:

  • Mario Prado Lara - Doctor of Philosophy
    An evaluation of statistical classification tools for microbiome and multiomic data
  • Abbie Uy - Doctor of Philosophy
    Estimating the burden of leptospirosis 鈥� a case study in Taranaki.
  • Wantida Horpiencharoen - Doctor of Philosophy
    Wild bovid habitat and infectious disease risk in Thailand
  • Michelle Gosse - Doctor of Philosophy
    A realistic synthetic population from multiple aggregate data sources with epidemiology applications

Completed Doctoral Supervision

Co-supervisor of:

  • 2020 - Ahmad Mahmoodjanlou - Doctor of Philosophy
    Modelling and Inference for Dynamic Traffic Networks
  • 2020 - Sih-Jing Liao - Doctor of Philosophy
    Statistical modelling of zoonotic diseases
  • 2019 - Carter Hranac - Doctor of Philosophy
    Ecology of infectious diseases in wild bats
  • 2019 - Leah Toombs-Ruane - Doctor of Philosophy
    Is the family pet a risk for multidrug resistant infections?
  • 2018 - Andrew Springer Browne - Doctor of Philosophy
    A food chain approach to control of shiga-toxin producing E. coli in New Zealand
  • view more...
  • 2017 - Samuel Bloomfield - Doctor of Philosophy
    Transmission and evolution of bacteria during the course of enteritis outbreaks
  • 2016 - Barbara Binney - Doctor of Philosophy
    The Microbial Ecology of Camplyobacter jejuni in New Zealand Within a Spatial-Temporal Framework
  • 2016 - Zoe Matthews - Doctor of Philosophy
    The search for biomarkers of facial eczema, following a sporidesmin challenge in dairy cows,using mass spectrometry and nuclear magnetic resonance of serum, urine, and milk
  • 2014 - Julanda Al Mawly - Doctor of Philosophy
    Epidemiological studies of enteropathogens of newborn calves in New Zealand dairy farms
  • 2013 - Wattoru Fernando - Doctor of Philosophy
    Non-Parametric Estimation of Geographical Relative Risk Functions
  • 2012 - Tilman Davies - Doctor of Philosophy
    Spatial and Spatiotemporal Point Process Modelling in Epidemiology
  • 2012 - Vathsala Mohan - Doctor of Philosophy
    Molecular Epidemiology of Campylocateriosis and Evolution of Campylocater jejuni ST-474 in New Zealand

Media and Links

Other Links

  • - My Github with code/teaching materials etc