Journal
Knox, MA., Biggs, PJ., Garcia-R, JC., & Hayman, DTS. (2024). Quantifying Replication Slippage Error in Cryptosporidium Metabarcoding Studies..
Journal of Infectious Diseases. 230(1), e144-e148 Retrieved from https://academic.oup.com/jid/article/230/1/e144/7603955#476157190
[Journal article]Authored by: Biggs, P., Garcia Ramirez, J., Hayman, D., Knox, M.Read article at Massey Research Online:
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Knox, MA., Biggs, PJ., Garcia, JCR., & Hayman, DTS. (2024). Quantifying Replication Slippage Error in Cryptosporidium Metabarcoding Studies.
Journal of Infectious Diseases. 230(1)
[Journal article]Authored by: Biggs, P., Garcia Ramirez, J., Hayman, D., Knox, M.Read article at Massey Research Online:
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Ogbuigwe, P., Roberts, JM., Knox, MA., Heiser, A., Pita, A., Haack, NA., . . . Hayman, DTS. (2023). A novel, stain-free, natural auto-fluorescent signal, Sig M, identified from cytometric and transcriptomic analysis of infectivity of Cryptosporidium hominis and Cryptosporidium parvum.
Frontiers in Cellular and Infection Microbiology. 13
[Journal article]Authored by: Biggs, P., French, N., Garcia Ramirez, J., Hayman, D., Knox, M., Pita, A., Velathanthiri, N.Read article at Massey Research Online:
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Hayman, DTS., Garcia-Ramirez, JC., Pita, A., Velathanthiri, N., Knox, MA., Ogbuigwe, P., . . . Gilpin, BJ. (2023). Diagnosis of protozoa diarrhoea in Campylobacter patients increases markedly with molecular techniques.
PLOS Global Public Health. 3(5)
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D., Knox, M., Pita, A., Velathanthiri, N.Read article at Massey Research Online:
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Garcia-R, JC., & Hayman, DTS. (2023). A review and analysis of cryptosporidiosis outbreaks in New Zealand.
Parasitology. 150(7), 606-611
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D.Read article at Massey Research Online:
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Garcia-R, JC., Pita, AB., Velathanthiri, N., Pas, A., & Hayman, DTS. (2023). Mammal-related Cryptosporidium infections in endemic reptiles of New Zealand.
Parasitology Research. 122(5), 1239-1244
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D., Pita, A., Velathanthiri, N.Read article at Massey Research Online:
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Ogbuigwe, P., Biggs, PJ., Garcia-Ramirez, JC., Knox, MA., Pita, A., Velathanthiri, N., . . . Hayman, DTS. (2022). Uncovering the genetic diversity of Giardia intestinalis in isolates from outbreaks in New Zealand.
Infectious Diseases of Poverty. 11(1)
[Journal article]Authored by: Biggs, P., French, N., Garcia Ramirez, J., Hayman, D., Knox, M., Pita, A., Velathanthiri, N.Read article at Massey Research Online:
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Knox, MA., Garcia-r, JC., & Hayman, DTS. (2021). Draft genome assemblies of two cryptosporidium hominis isolates from New Zealand.
Microbiology Resource Announcements. 10(26)
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D., Knox, M.Read article at Massey Research Online:
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Knox, MA., Garcia-R, JC., Ogbuigwe, P., Pita, A., Velathanthiri, N., & Hayman, DTS. (2021). Absence of Cryptosporidium hominis and dominance of zoonotic Cryptosporidium species in patients after Covid-19 restrictions in Auckland, New Zealand.
Parasitology. 148(11), 1288-1292
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D., Knox, M., Pita, A., Velathanthiri, N.Read article at Massey Research Online:
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Garcia-R, JC., Ogbuigwe, P., Pita, AB., Velathanthiri, N., Knox, MA., Biggs, PJ., . . . Hayman, DTS. (2021). First report of novel assemblages and mixed infections of Giardia duodenalis in human isolates from New Zealand.
Acta Tropica. 220
[Journal article]Authored by: Biggs, P., French, N., Garcia Ramirez, J., Hayman, D., Knox, M., Pita, A., Velathanthiri, N.Read Online:
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Garcia-R, JC., & Matzke, NJ. (2021). Trait-dependent dispersal in rails (Aves: Rallidae): Historical biogeography of a cosmopolitan bird clade.
Molecular Phylogenetics and Evolution. 159
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Phiri, BJ., Hayman, DTS., Biggs, PJ., French, NP., & Garcia-R, JC. (2021). Microbial diversity in water and animal faeces: a metagenomic analysis to assess public health risk.
New Zealand Journal of Zoology. 48(3-4), 188-201
[Journal article]Authored by: Biggs, P., French, N., Garcia Ramirez, J., Hayman, D.Read Online:
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Garcia-R, JC., & Di Marco, M. (2020). Drivers and trends in the extinction risk of New Zealand's endemic birds.
Biological Conservation. 249
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Garcia-R, JC., Cox, MP., & Hayman, DTS. (2020). Comparative genetic diversity of Cryptosporidium species causing human infections.
Parasitology. 147(13), 1532-1537
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D.Read Online:
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Phiri, BJ., French, NP., Biggs, PJ., Stevenson, MA., Reynolds, AD., Garcia-R, JC., . . . Hayman, DTS. (2021). Microbial contamination in drinking water at public outdoor recreation facilities in New Zealand.
Journal of Applied Microbiology. 130(1), 302-312
[Journal article]Authored by: Biggs, P., French, N., Garcia Ramirez, J., Hayman, D.Read Online:
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Knox, MA., Hogg, ID., Pilditch, CA., Garcia-R, JC., Hebert, PDN., & Steinke, D. (2020). Contrasting patterns of genetic differentiation for deep-sea amphipod taxa along New Zealand's continental margins.
Deep-Sea Research Part I: Oceanographic Research Papers. 162
[Journal article]Authored by: Garcia Ramirez, J., Knox, M.Read Online:
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Garcia-R, JC., Pita, AB., Velathanthiri, N., French, NP., & Hayman, DTS. (2020). Species and genotypes causing human cryptosporidiosis in New Zealand.
Parasitology Research. 119(7), 2317-2326
[Journal article]Authored by: French, N., Garcia Ramirez, J., Hayman, D., Pita, A., Velathanthiri, N.Read Online:
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Garcia-R., JC., Lemmon, EM., Lemmon, AR., & French, N. (2020). Phylogenomic reconstruction sheds light on new relationships and timescale of rails (Aves: Rallidae) evolution.
Diversity. 12(2)
[Journal article]Authored by: French, N., Garcia Ramirez, J.Read Online:
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Valente, L., Etienne, RS., & Garcia-R., JC. (2019). Deep Macroevolutionary Impact of Humans on New Zealand's Unique Avifauna.
Current Biology. 29(15), 2563-2569.e4
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Garcia–R, JC., Gonzalez-Orozco, CE., & Trewick, SA. (2019). Contrasting patterns of diversification in a bird family (Aves: Gruiformes: Rallidae) are revealed by analysis of geospatial distribution of species and phylogenetic diversity.
Ecography. 42(3), 500-510
[Journal article]Authored by: Garcia Ramirez, J., Trewick, S.Read Online:
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Garcia-R, JC., Castro-H, F., & Cardenas-H, H. (2005). Relationship among anurans distribution and habitat variables at La Romelia, Munchique National Park (Cauca, Colombia).
CALDASIA. 27(2), 299-310
[Journal article]Authored by: Garcia Ramirez, J.Trompetter, WJ., Boulic, M., Ancelet, T., Garcia-Ramirez, JC., Davy, PK., Wang, Y., . . . Phipps, R. (2018). The effect of ventilation on air particulate matter in school classrooms.
Journal of Building Engineering. 18, 164-171
[Journal article]Authored by: Boulic, M., Garcia Ramirez, J.Read Online:
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Gedye, KR., Fremaux, M., Garcia-Ramirez, JC., & Gartrell, BD. (2018). A preliminary survey of Chlamydia psittaci genotypes from native and introduced birds in New Zealand.
New Zealand Veterinary Journal. 66(3), 162-165
[Journal article]Authored by: Garcia Ramirez, J., Gartrell, B.Read Online:
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Garcia-R, JC., French, N., Pita, A., Velathanthiri, N., Shrestha, R., & Hayman, D. (2017). Local and global genetic diversity of protozoan parasites: Spatial distribution of Cryptosporidium and Giardia genotypes.
PLoS Neglected Tropical Diseases. 11(7), Retrieved from https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0005736
[Journal article]Authored by: French, N., Garcia Ramirez, J., Hayman, D., Pita, A., Velathanthiri, N.Read Online:
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Garcia-R, JC., & Hayman, DTS. (2017). Evolutionary processes in populations of Cryptosporidium inferred from gp60 sequence data.
Parasitology Research. 116(7), 1855-1861
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D.Read Online:
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Hudson, LN., Newbold, T., Contu, S., Hill, SLL., Lysenko, I., De Palma, A., . . . Cagle, NL. (2017). The database of the PREDICTS (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems) project.
Ecology and Evolution. 7(1), 145-188
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Garcia-R, JC., Joseph, L., Adcock, G., Reid, J., & Trewick, SA. (2017). Interisland gene flow among populations of the buff-banded rail (Aves: Rallidae) and its implications for insular endemism in Oceania.
Journal of Avian Biology. 48(5), 679-690
[Journal article]Authored by: Garcia Ramirez, J., Trewick, S.Read Online:
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Hayman, DTS., Fooks, AR., Marston, DA., & Garcia-R, JC. (2016). The Global Phylogeography of Lyssaviruses - Challenging the 'Out of Africa' Hypothesis.
PLoS Neglected Tropical Diseases. 10(12)
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D.Read Online:
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Garcia-R, JC., & Hayman, DTS. (2016). Origin of a major infectious disease in vertebrates: The timing of Cryptosporidium evolution and its hosts.
Parasitology. 143(13), 1683-1690
[Journal article]Authored by: Garcia Ramirez, J., Hayman, D.Read Online:
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Garcia-R, JC., Elliott, G., Walker, K., Castro, I., & Trewick, SA. (2016). Trans-equatorial range of a land bird lineage (Aves: Rallidae) from tropical forests to subantarctic grasslands.
Journal of Avian Biology. 47(2), 219-226
[Journal article]Authored by: Castro, I., Garcia Ramirez, J., Trewick, S.Read Abstract:
Sangster, G., García-R, JC., & Trewick, SA. (2015). A new genus for the Lesser Moorhen Gallinula angulata Sundevall, 1850 (Aves, Rallidae).
European Journal of Taxonomy. 2015(153), 1-8
[Journal article]Authored by: Garcia Ramirez, J., Trewick, S.Read Online:
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Garcia-R, JC., Posso-Gómez, CE., & Cárdenas-Henao, H. (2015). Diet of direct-developing frogs (Anura: Craugastoridae: Pristimantis) from the andes of Western Colombia.
Acta Biologica Colombiana. 20(1), 79-87
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Mendoza, ÁM., Ospina, OE., Cárdenas-Henao, H., & García-R, JC. (2015). A likelihood inference of historical biogeography in the world's most diverse terrestrial vertebrate genus: Diversification of direct-developing frogs (Craugastoridae: Pristimantis) across the Neotropics.
Molecular Phylogenetics and Evolution. 85, 50-58
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Garcia, JRC., & Trewick, SA. (2015). Dispersal and speciation in purple swamphens (Rallidae: Porphyrio).
Auk. 132(1), 140-155
[Journal article]Authored by: Garcia Ramirez, J., Trewick, S.Read Online:
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Garcia-R, JC., Mendoza, AM., Ospina, O., Cardenas, H., & Castro, F. (2014). A morphometric and molecular approach to define three closely related species of frogs of the genus Pristimantis (Anura: Craugastoridae) from the cordillera occidental in Colombia.
Journal of Herpetology. 48(2), 220-227
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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García-R, JC., Gibb, GC., & Trewick, SA. (2014). Eocene diversification of crown group rails (Aves: Gruiformes: Rallidae).
PLoS ONE. 9(10)
[Journal article]Authored by: Garcia Ramirez, J., Gibb, G., Trewick, S.Read Online:
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Garcia-R, JC., Gibb, GC., & Trewick, SA. (2014). Deep global evolutionary radiation in birds: Diversification and trait evolution in the cosmopolitan bird family Rallidae.
Molecular Phylogenetics and Evolution. 81, 96-108
[Journal article]Authored by: Garcia Ramirez, J., Gibb, G., Trewick, S.Read Online:
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Juan Carlos García, R., Lucas-Velásquez, L., Henao, HC., & Gómez, CEP. (2012). Feeding ecology of the endemic rain frog Pristimantis jubatus (Craugastoridae) in Munchique National Park, Colombia.
Acta Biologica Colombiana. 17(2), 409-418
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
Mendoza, AM., García-Ramirez, JC., & Cárdenas-Henao, H. (2012). Epithelial mucosa as an alternative tissue for DNA extraction in amphibians.
Conservation Genetics Resources. 4(4), 1097-1099
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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García-R, JC., Crawford, AJ., Mendoza, AM., Ospina, O., Cardenas, H., & Castro, F. (2012). Comparative Phylogeography of Direct-Developing Frogs (Anura: Craugastoridae: Pristimantis) in the Southern Andes of Colombia.
PLoS ONE. 7(9)
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Mendoza, AM., García-Ramírez, JC., & Cárdenas-Henao, H. (2012). Blood puncture as a nondestructive sampling tool to obtain DNA in frogs: Comparison of protocols and survival analysis.
Molecular Ecology Resources. 12(3), 470-475
[Journal article]Authored by: Garcia Ramirez, J.Read Online:
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Garcia-R, JC., & Galindez, L. (2011). Caracterización ecológica preliminar de la microcuenca que abastece de agua al acueducto municipal de San Jose del Guaviare, Colombia.
Revista de Ingenieria de los Recursos Naturales y del Ambiente. 10, 31-44
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
Garcia-R, JC., & Cardenas-H, H. (2010). Efecto de Rapoport en las ranas Terrarana de America continental: Gradientes de riqueza latitudinal y altitudinal..
Revista Novedades Colombianas. 10, 1-16
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
Garcia-R, JC., Cardenas, H., & Castro, F. (2007). Relación entre la diversidad de anuros y los estados sucesionales de un bosque muy húmedo montano bajo del Valle del Cauca, suroccidente colombiano.
Caldasia. 29, 363-374
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
García, JC., & Lynch, JD. (2006). A new species of frog (genus Eleutherodactylus) from a cloud forest in Western Colombia.
Zootaxa. (1171), 39-45
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
Garcia-R, JC., & Pardo, L. (2004). Escarabajos Scarabaeinae saprófagos (Coleoptera: Scarabaeidae) de un bosque muy húmedo premontano de los Andes Occidentales Colombianos.
Ecologia Aplicada. 3, 59-63
[Journal article]Authored by: Garcia Ramirez, J.Read Abstract:
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Conference
Garcia-R, JC., & Hayman, D, . (2017).
Origin of a major infectious disease in vertebrates: The timing of Cryptosporidium evolution and its hosts. Poster session presented at the meeting of VI International Giardia and Cryptosporidium Conference, Havana, Cuba
[Conference Poster]Authored by: Garcia Ramirez, J.Read Abstract:
Garcia–R, JC., French, N., Pita, A., Velathanthiri, N., Shrestha, R., & Hayman, D. (2017).
Local and global genetic diversity of protozoan parasites: Spatial distribution of Cryptosporidium and Giardia genotypes.
[Conference Poster]Authored by: French, N., Garcia Ramirez, J., Hayman, D., Pita, A., Velathanthiri, N.Read Abstract:
Boulic, M., Trompetter, W., Garcia-R, JC., & Howden-Chapman, P.
Improving indoor air quality in New Zealand classrooms with a solar ventilation unit (solar collector): the air particulate part. . Ghent, Belgium
[Conference Paper]Authored by: Boulic, M., Garcia Ramirez, J.Boulic, M., Trompetter, W., Garcia-R, JC., & Phipps, R.
Air particulate sources and activity inside school classrooms. . Melbourne, Australia
[Conference Paper]Authored by: Boulic, M., Garcia Ramirez, J.Trompetter, W., Boulic, M., Garcia-R, JC., Davy, P., & Phipps, R.
Air particulate sources and activity inside school classrooms. . Bexco, Busan, Republic of Korea
[Conference Paper]Authored by: Boulic, M., Garcia Ramirez, J.view more...
Garcia-R, JC., Gibb, G., & Trewick, S. (2015). Comparative evolution of the rails (Aves: Rallidae) in Australasia: Phylogeography analysis of supertramp species. In
26th International Ornithological Congress abstract booklet Vol. 156 , 26th International Ornithological Congress (IOC 2014)
[Conference Abstract]Authored by: Garcia Ramirez, J., Gibb, G., Trewick, S.Mendoza, MA., Ospina, OE., Cardenas-Henao, H., & Garcia-R, JC. (2014, December). Diversification in direct-developing frogs (Strabomantidae: Pristimantis) across the Neotropics. Presented at
IV CONGRESO COLOMBIANO DE ZOOLOGÍA (Núm 4). Cartagena, Colombia.
[Conference Oral Presentation]Authored by: Garcia Ramirez, J.Read Abstract:
Garcia-R, JC., & Trewick, S. (2014, January). Phylogegraphic analysis of the supertramp swamphen Porphyrio porphyrio (Aves:Rallidae): Diversification and geneflow with emphasis on the Indo-Pacific region. Presented at
IBS Early Career Conference
[Conference Oral Presentation]Authored by: Garcia Ramirez, J., Trewick, S.Garcia-R, JC., Gibb, G., & Trewick, S. (2014).
“Rail ways”. Poster session presented at the meeting of 26th International Ornithological Congress. Tokyo, Japan
[Conference Poster]Authored by: Garcia Ramirez, J., Gibb, G., Trewick, S.Garcia-R, JC. (2011, September). A comprehensive molecular phylogeny of the rails (aves:
rallidae): mitochondrial and nuclear DNA trees for an avian
family. Presented at
Australasian Ornithological Conference. Cairns, Australia.
[Conference Oral Presentation]Authored by: Garcia Ramirez, J. 